<HTML><HEAD><TITLE>Motif 15</TITLE></HEAD>
<H2>Information for 15-GCCAAGGCAGGG (Motif 15)</H2>
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<TABLE border="1" cellpading="0" cellspacing="0">
<TR><TD>p-value:</TD><TD>1e-3</TD></TR>
<TR><TD>log p-value:</TD><TD>-9.045e+00</TD></TR>
<TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
<TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
<TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
<TR><TD>Number of Background Sequences with motif</TD><TD>11.2</TD></TR>
<TR><TD>Percentage of Background Sequences with motif</TD><TD>0.01%</TD></TR>
<TR><TD>Average Position of motif in Targets</TD><TD>144.0 +/- 0.0bp</TD></TR>
<TR><TD>Average Position of motif in Background</TD><TD>170.9 +/- 31.1bp</TD></TR>
<TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
<TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
<TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif15.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif15RV.motif">reverse opposite</A></TD></TR>
<TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif15.logo.svg">forward logo</A><BR/><A HREF="motif15RV.logo.svg">reverse opposite</A></TD></TR>
</TABLE>
<H3>Matches to Known Motifs</H3>
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<TR><TD>
<H4>NFIC/MA0161.2/Jaspar</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>1</TD></TR>
<TR><TD>Score:</TD><TD>0.64</TD</TR>
<TR><TD>Offset:</TD><TD>-3</TD</TR>
<TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">---GCCAAGGCAGGG</FONT><BR><FONT face="courier">NNTGCCAAGNN----</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR></TABLE>
</TD></TR>
<TR><TD>
<H4>NFIX/MA0671.1/Jaspar</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>2</TD></TR>
<TR><TD>Score:</TD><TD>0.62</TD</TR>
<TR><TD>Offset:</TD><TD>-3</TD</TR>
<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">---GCCAAGGCAGGG</FONT><BR><FONT face="courier">CGTGCCAAG------</FONT></TD></TR></TABLE>
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</TD></TR>
<TR><TD>
<H4>p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>3</TD></TR>
<TR><TD>Score:</TD><TD>0.61</TD</TR>
<TR><TD>Offset:</TD><TD>-2</TD</TR>
<TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">--GCCAAGGCAGGG</FONT><BR><FONT face="courier">ATGCCCGGGCATGT</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR>
<TR><TD>
<H4>SD0002.1_at_AC_acceptor/Jaspar</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>4</TD></TR>
<TR><TD>Score:</TD><TD>0.61</TD</TR>
<TR><TD>Offset:</TD><TD>3</TD</TR>
<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">GCCAAGGCAGGG--</FONT><BR><FONT face="courier">---AAGGCAAGTGT</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR></TABLE>
</TD></TR>
<TR><TD>
<H4>NFIA/MA0670.1/Jaspar</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>5</TD></TR>
<TR><TD>Score:</TD><TD>0.59</TD</TR>
<TR><TD>Offset:</TD><TD>-3</TD</TR>
<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">---GCCAAGGCAGGG</FONT><BR><FONT face="courier">GGTGCCAAGT-----</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR>
<TR><TD>
<H4>Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>6</TD></TR>
<TR><TD>Score:</TD><TD>0.58</TD</TR>
<TR><TD>Offset:</TD><TD>2</TD</TR>
<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">GCCAAGGCAGGG--</FONT><BR><FONT face="courier">--CACAGCAGGGGG</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR>
<TR><TD>
<H4>Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>7</TD></TR>
<TR><TD>Score:</TD><TD>0.58</TD</TR>
<TR><TD>Offset:</TD><TD>-2</TD</TR>
<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">--GCCAAGGCAGGG-</FONT><BR><FONT face="courier">GGGGCTYGKCTGGGA</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR></TABLE>
</TD></TR>
<TR><TD>
<H4>Zic2/MA1629.1/Jaspar</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>8</TD></TR>
<TR><TD>Score:</TD><TD>0.57</TD</TR>
<TR><TD>Offset:</TD><TD>0</TD</TR>
<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">GCCAAGGCAGGG--</FONT><BR><FONT face="courier">CTCACAGCAGGGGG</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR></TABLE>
</TD></TR>
<TR><TD>
<H4>Ebf2/MA1604.1/Jaspar</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>9</TD></TR>
<TR><TD>Score:</TD><TD>0.56</TD</TR>
<TR><TD>Offset:</TD><TD>-2</TD</TR>
<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">--GCCAAGGCAGGG</FONT><BR><FONT face="courier">TTCCCAAGGGACT-</FONT></TD></TR></TABLE>
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<TR><TD>
<H4>Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>10</TD></TR>
<TR><TD>Score:</TD><TD>0.56</TD</TR>
<TR><TD>Offset:</TD><TD>-4</TD</TR>
<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">----GCCAAGGCAGGG</FONT><BR><FONT face="courier">NGTTGCCATGGCAA--</FONT></TD></TR></TABLE>
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